Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

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Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

Haas, Brian J. (author)

Kamoun, Sophien (author)

Zody, Michael C. (author): Uppsala universitet,Institutionen för medicinsk biokemi och mikrobiologi

Jiang, Rays H. Y. (author)

Handsaker, Robert E. (author)

Cano, Liliana M. (author)

Grabherr, Manfred (author)

Kodira, Chinnappa D. (author)

Raffaele, Sylvain (author)

Torto-Alalibo, Trudy (author)

Bozkurt, Tolga O. (author)

Ah-Fong, Audrey M. V. (author)

Alvarado, Lucia (author)

Anderson, Vicky L. (author)

Armstrong, Miles R. (author)

Avrova, Anna (author)

Baxter, Laura (author)

Beynon, Jim (author)

Boevink, Petra C. (author)

Bollmann, Stephanie R. (author)

Bos, Jorunn I. B. (author)

Bulone, Vincent (author): KTH,Glykovetenskap

Cai, Guohong (author)

Cakir, Cahid (author)

Carrington, James C. (author)

Chawner, Megan (author)

Conti, Lucio (author)

Costanzo, Stefano (author)

Ewan, Richard (author)

Fahlgren, Noah (author)

Fischbach, Michael A. (author)

Fugelstad, Johanna (author): KTH,Glykovetenskap

Gilroy, Eleanor M. (author)

Gnerre, Sante (author)

Green, Pamela J. (author)

Grenville-Briggs, Laura J. (author)

Griffith, John (author)

Gruenwald, Niklaus J. (author)

Horn, Karolyn (author)

Horner, Neil R. (author)

Hu, Chia-Hui (author)

Huitema, Edgar (author)

Jeong, Dong-Hoon (author)

Jones, Alexandra M. E. (author)

Jones, Jonathan D. G. (author)

Jones, Richard W. (author)

Karlsson, Elinor K. (author)

Kunjeti, Sridhara G. (author)

Lamour, Kurt (author)

Liu, Zhenyu (author)

Ma, LiJun (author)

MacLean, Daniel (author)

Chibucos, Marcus C. (author)

McDonald, Hayes (author)

McWalters, Jessica (author)

Meijer, Harold J. G. (author)

Morgan, William (author)

Morris, Paul F. (author)

Munro, Carol A. (author)

O'Neill, Keith (author)

Ospina-Giraldo, Manuel (author)

Pinzon, Andres (author)

Pritchard, Leighton (author)

Ramsahoye, Bernard (author)

Ren, Qinghu (author)

Restrepo, Silvia (author)

Roy, Sourav (author)

Sadanandom, Ari (author)

Savidor, Alon (author)

Schornack, Sebastian (author)

Schwartz, David C. (author)

Schumann, Ulrike D. (author)

Schwessinger, Ben (author)

Seyer, Lauren (author)

Sharpe, Ted (author)

Silvar, Cristina (author)

Song, Jing (author)

Studholme, David J. (author)

Sykes, Sean (author)

Thines, Marco (author)

van de Vondervoort, Peter J. I. (author)

Phuntumart, Vipaporn (author)

Wawra, Stephan (author)

Weide, Rob (author)

Win, Joe (author)

Young, Carolyn (author)

Zhou, Shiguo (author)

Fry, William (author)

Meyers, Blake C. (author)

van West, Pieter (author)

Ristaino, Jean (author)

Govers, Francine (author)

Birch, Paul R. J. (author)

Whisson, Stephen C. (author)

Judelson, Howard S. (author)

Nusbaum, Chad (author)

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(creator_code:org_t)

2009-09-09
2009
English.
In: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 461:7262, s. 393-398

Related links:: https://www.nature.c...; show more...; https://urn.kb.se/re...; https://doi.org/10.1...; https://urn.kb.se/re...; show less...

Journal article (peer-reviewed)

Abstract Subject headings

Phytophthora infestans is the most destructive pathogen of potato and a model organism for the oomycetes, a distinct lineage of fungus-like eukaryotes that are related to organisms such as brown algae and diatoms. As the agent of the Irish potato famine in the mid-nineteenth century, P. infestans has had a tremendous effect on human history, resulting in famine and population displacement(1). To this day, it affects world agriculture by causing the most destructive disease of potato, the fourth largest food crop and a critical alternative to the major cereal crops for feeding the world's population(1). Current annual worldwide potato crop losses due to late blight are conservatively estimated at $6.7 billion(2). Management of this devastating pathogen is challenged by its remarkable speed of adaptation to control strategies such as genetically resistant cultivars(3,4). Here we report the sequence of the P. infestans genome, which at similar to 240 megabases (Mb) is by far the largest and most complex genome sequenced so far in the chromalveolates. Its expansion results from a proliferation of repetitive DNA accounting for similar to 74% of the genome. Comparison with two other Phytophthora genomes showed rapid turnover and extensive expansion of specific families of secreted disease effector proteins, including many genes that are induced during infection or are predicted to have activities that alter host physiology. These fast-evolving effector genes are localized to highly dynamic and expanded regions of the P. infestans genome. This probably plays a crucial part in the rapid adaptability of the pathogen to host plants and underpins its evolutionary potential.

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By the author/editor: Haas, Brian J.; Kamoun, Sophien; Zody, Michael C.; Jiang, Rays H. Y ...; Handsaker, Rober ...; Cano, Liliana M.; show more...; Grabherr, Manfre ...; Kodira, Chinnapp ...; Raffaele, Sylvai ...; Torto-Alalibo, T ...; Bozkurt, Tolga O ...; Ah-Fong, Audrey ...; Alvarado, Lucia; Anderson, Vicky ...; Armstrong, Miles ...; Avrova, Anna; Baxter, Laura; Beynon, Jim; Boevink, Petra C ...; Bollmann, Stepha ...; Bos, Jorunn I. B ...; Bulone, Vincent; Cai, Guohong; Cakir, Cahid; Carrington, Jame ...; Chawner, Megan; Conti, Lucio; Costanzo, Stefan ...; Ewan, Richard; Fahlgren, Noah; Fischbach, Micha ...; Fugelstad, Johan ...; Gilroy, Eleanor ...; Gnerre, Sante; Green, Pamela J.; Grenville-Briggs ...; Griffith, John; Gruenwald, Nikla ...; Horn, Karolyn; Horner, Neil R.; Hu, Chia-Hui; Huitema, Edgar; Jeong, Dong-Hoon; Jones, Alexandra ...; Jones, Jonathan ...; Jones, Richard W ...; Karlsson, Elinor ...; Kunjeti, Sridhar ...; Lamour, Kurt; Liu, Zhenyu; Ma, LiJun; MacLean, Daniel; Chibucos, Marcus ...; McDonald, Hayes; McWalters, Jessi ...; Meijer, Harold J ...; Morgan, William; Morris, Paul F.; Munro, Carol A.; O'Neill, Keith; Ospina-Giraldo, ...; Pinzon, Andres; Pritchard, Leigh ...; Ramsahoye, Berna ...; Ren, Qinghu; Restrepo, Silvia; Roy, Sourav; Sadanandom, Ari; Savidor, Alon; Schornack, Sebas ...; Schwartz, David ...; Schumann, Ulrike ...; Schwessinger, Be ...; Seyer, Lauren; Sharpe, Ted; Silvar, Cristina; Song, Jing; Studholme, David ...; Sykes, Sean; Thines, Marco; van de Vondervoo ...; Phuntumart, Vipa ...; Wawra, Stephan; Weide, Rob; Win, Joe; Young, Carolyn; Zhou, Shiguo; Fry, William; Meyers, Blake C.; van West, Pieter; Ristaino, Jean; Govers, Francine; Birch, Paul R. J ...; Whisson, Stephen ...; Judelson, Howard ...; Nusbaum, Chad; show less...

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NATURAL SCIENCES: NATURAL SCIENCES; and Biological Scien ...

Articles in the publication: Nature

By the university: Uppsala University; Royal Institute of Technology

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Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

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